Scicluster User guide

Scicluster is the local computer cluster of Faculty of Science of Ferdowsi University of Mashhad, constructed and maintained by SCI-HPC group. If you are new here, you might want to learn the basics first here:

• Getting started
• News and notifications

Scicluster

• About Scicluster
  • A Linux Cluster - one machine, consisting of many machines

Login

• Logging in for the first time

Jobs

• Dos and don’ts
• Batch system

• SLURM Workload Manager
  • SLURM Parameter
  • Differences between CPUs and tasks
  • Settings for OpenMP and MPI jobs
  • Job related environment variables
  • Partitions (queues)
  • Quality of servisec (QOS)

• Job script examples
• Interactive job
• Managing jobs
• Monitoring your jobs
• Running MPI jobs

Web Portal

• Web Portal

Software

• Which software is installed on Scicluster
• Missing or new software
• Software Module Scheme
• Python and R

• Application guides
  • GIZMO, a flexible, massively-parallel, multi-physics simulation code
  • Mathematica

Storage

• Storage

Code development

• Compilers
• Environment modules
• Toolchains and EasyBuild
• Building softwares